Create CVA grid from seamount locations
gmt hotspotter [table] -Erot_file|ID1-ID2|lon/lat/angle[+i] -Goutgrid -Iincrement -Rregion [ -Nupper_age ] [ -S ] [ -T ] [ -V[level] ] [ -bibinary ] [ -di[+ccol]nodata ] [ -eregexp ] [ -ggaps ] [ -hheaders ] [ -iflags ] [ -oflags ] [ -qiflags ] [ -rreg ] [ -:[i|o] ] [ --PAR=value ]
Note: No space is allowed between the option flag and the associated arguments.
hotspotter reads (longitude, latitude, amplitude, radius, age) records from table [or standard input] and calculates flowlines using the specified stage or total reconstruction rotations. These flowlines are convolved with the shape of the seamount (using a Gaussian shape given amplitude and radius = 6 sigma) and added up to give a Cumulative Volcano Amplitude grid (CVA). See option -: on how to read (latitude,longitude,…) files.
One or more ASCII (or binary, see -bi[ncols][type]) data table file(s) holding a number of data columns. If no tables are given then we read from standard input.
Rotations can be specified in one of three ways: (1): Give file with rotation parameters. This file must contain one record for each rotation; each record must be of the following format:
lon lat tstart [tstop] angle [ khat a b c d e f g df ]
where tstart and tstop are in Myr and lon lat angle are in degrees. tstart and tstop are the ages of the old and young ends of a stage. If tstop is not present in the record then a total reconstruction rotation is expected and tstop is implicitly set to 0 and should not be specified for any of the records in the file. If a covariance matrix C for the rotation is available it must be specified in a format using the nine optional terms listed in brackets. Here, C = (g/khat)*[ a b d; b c e; d e f ] which shows C made up of three row vectors. If the degrees of freedom (df) in fitting the rotation is 0 or not given it is set to 10000. Blank lines and records whose first column contains # will be ignored. (2): Give the filename composed of two plate IDs separated by a hyphen (e.g., PAC-MBL) and we will instead extract that rotation from the GPlates rotation database. We return an error if the rotation cannot be found. (3): Specify lon/lat/angle, i.e., the longitude, latitude, and opening angle (all in degrees and separated by /) for a single total reconstruction rotation. Regardless of method, you may append +i to the argument to indicate you wish to invert the rotation(s).
-Goutgrid[=ID][+ddivisor][+ninvalid] [+ooffset|a][+sscale|a] [:driver[dataType][+coptions]]
Specify name for output grid file. Optionally, append =ID for writing a specific file format (See full description). The following modifiers are supported:
+d - Divide data values by given divisor [Default is 1].
+n - Replace data values matching invalid with a NaN.
+o - Offset data values by the given offset, or append a for automatic range offset to preserve precision for integer grids [Default is 0].
+s - Scale data values by the given scale, or append a for automatic scaling to preserve precision for integer grids [Default is 1].
Note: Any offset is added before any scaling. +sa also sets +oa (unless overridden). To write specific formats via GDAL, use = gd and supply driver (and optionally dataType) and/or one or more concatenated GDAL -co options using +c. See the “Writing grids and images” cookbook section for more details.
Set the grid spacing as x_inc [and optionally y_inc].
Geographical (degrees) coordinates: Optionally, append an increment unit. Choose among:
m to indicate arc minutes
s to indicate arc seconds
e (meter), f (foot), k (km), M (mile), n (nautical mile) or u (US survey foot), in which case the increment will be converted to the equivalent degrees longitude at the middle latitude of the region (the conversion depends on PROJ_ELLIPSOID). If y_inc is given but set to 0 it will be reset equal to x_inc; otherwise it will be converted to degrees latitude.
All coordinates: The following modifiers are supported:
+e to slightly adjust the max x (east) or y (north) to fit exactly the given increment if needed [Default is to slightly adjust the increment to fit the given domain].
+n to define the number of nodes rather than the increment, in which case the increment is recalculated from the number of nodes, the registration (see GMT File Formats), and the domain. Note: If -Rgrdfile is used then the grid spacing and the registration have already been initialized; use -I and -R to override these values.
Specify the region of interest.
The region may be specified in one of several ways:
-Rwest/east/south/north[+uunit]. This is the standard way to specify geographic regions when using map projections where meridians and parallels are rectilinear. The coordinates may be specified in decimal degrees or in [±]dd:mm[:ss.xxx][W|E|S|N] format. Optionally, append +uunit to specify a region in projected units (e.g., UTM meters) where west/east/south/north are Cartesian projected coordinates compatible with the chosen projection (-J) and unit is an allowable distance unit; we inversely project to determine the actual rectangular geographic region.
-Rwest/south/east/north+r. This form is useful for map projections that are oblique, making meridians and parallels poor choices for map boundaries. Here, we instead specify the lower left corner and upper right corner geographic coordinates, followed by the modifier +r. This form guarantees a rectangular map even though lines of equal longitude and latitude are not straight lines.
-Rg or -Rd. These forms can be used to quickly specify the global domain (0/360 for -Rg and -180/+180 for -Rd in longitude, with -90/+90 in latitude).
-Rcode1,code2,…[+e|r|Rincs]. This indirectly supplies the region by consulting the DCW (Digital Chart of the World) database and derives the bounding regions for one or more countries given by the codes. Simply append one or more comma-separated countries using the two-character ISO 3166-1 alpha-2 convention. To select a state within a country (if available), append .state, e.g, US.TX for Texas. To specify a whole continent, prepend = to any of the continent codes AF (Africa), AN (Antarctica), AS (Asia), EU (Europe), OC (Oceania), NA (North America), or SA (South America). The following modifiers can be appended:
+r to adjust the region boundaries to be multiples of the steps indicated by inc, xinc/yinc, or winc/einc/sinc/ninc [default is no adjustment]. For example, -RFR+r1 will select the national bounding box of France rounded to nearest integer degree.
+R to extend the region outward by adding the amounts specified by inc, xinc/yinc, or winc/einc/sinc/ninc [default is no extension].
+e to adjust the region boundaries to be multiples of the steps indicated by inc, xinc/yinc, or winc/einc/sinc/ninc, while ensuring that the bounding box extends by at least 0.25 times the increment [default is no adjustment].
-Rjustifylon0/lat0/nx/ny, where justify is a 2-character combination of L|C|R (for left, center, or right) and T|M|B (for top, middle, or bottom) (e.g., BL for lower left). The two character code justify indicates which point on a rectangular region region the lon0/lat0 coordinates refer to and the grid dimensions nx and ny are used with grid spacings given via -I to create the corresponding region. This method can be used when creating grids. For example, -RCM25/25/50/50 specifies a 50x50 grid centered on 25,25.
-Rgridfile. This will copy the domain settings found for the grid in specified file. Note that depending on the nature of the calling module, this mechanism will also set grid spacing and possibly the grid registration (see Grid registration: The -r option).
-Ra[uto] or -Re[xact]. Under modern mode, and for plotting modules only, you can automatically determine the region from the data used. You can either get the exact area using -Re [Default if no -R is given] or a slightly larger area sensibly rounded outwards to the next multiple of increments that depend on the data range using -Ra.
Modify the sampling interval along flowlines. Default [0.5] gives approximately 2 points within each grid box. Smaller factors gives higher resolutions at the expense of longer processing time.
Set the upper age to assign seamounts whose crustal age is unknown (i.e., NaN) [no upper age].
Normalize the resulting CVA grid to percentages of the CVA maximum.
Truncate seamount ages exceeding the upper age set with -N [no truncation].
- -birecord[+b|l] (more …)
Select native binary format for primary table input. [Default is 5 input columns].
- -dinodata[+ccol] (more …)
Replace input columns that equal nodata with NaN.
- -e[~]“pattern” | -e[~]/regexp/[i] (more …)
Only accept data records that match the given pattern.
- -h[i|o][n][+c][+d][+msegheader][+rremark][+ttitle] (more …)
Skip or produce header record(s).
- -icols[+l][+ddivisor][+sscale|d|k][+ooffset][,…][,t[word]] (more …)
Select input columns and transformations (0 is first column, t is trailing text, append word to read one word only).
- -ocols[,…][,t[word]] (more …)
Select output columns (0 is first column; t is trailing text, append word to write one word only).
- -qi[~]rows|limits[+ccol][+a|f|s] (more …)
Select input rows or data limit(s) [default is all rows].
- -r[g|p] (more …)
Set node registration [gridline].
- -:[i|o] (more …)
Swap 1st and 2nd column on input and/or output.
- -^ or just -
Print a short message about the syntax of the command, then exit (NOTE: on Windows just use -).
- -+ or just +
Print an extensive usage (help) message, including the explanation of any module-specific option (but not the GMT common options), then exit.
- -? or no arguments
Print a complete usage (help) message, including the explanation of all options, then exit.
Temporarily override a GMT default setting; repeatable. See gmt.conf for parameters.
Geodetic versus Geocentric Coordinates¶
All spherical rotations are applied to geocentric coordinates. This means that incoming data points and grids are considered to represent geodetic coordinates and must first be converted to geocentric coordinates. Rotations are then applied, and the final reconstructed points are converted back to geodetic coordinates. This default behavior can be bypassed if the ellipsoid setting PROJ_ELLIPSOID is changed to Sphere.
To create a CVA image from the Pacific (x,y,z,r,t) data in the file seamounts.txt, using the DC85.txt Euler poles, run
gmt hotspotter seamounts.txt -EDC85.txt -GCVA.nc -R130/260/-66/60 -I10m -N145 -T -V
This file can then be plotted with grdimage.
GMT distributes the EarthByte rotation model Global_EarthByte_230-0Ma_GK07_AREPS.rot. To use an alternate rotation file, create an environmental parameters named GPLATES_ROTATIONS that points to an alternate rotation file.
Wessel, P., 1999, “Hotspotting” tools released, EOS Trans. AGU, 80 (29), p. 319.
Wessel, P., 2008, Hotspotting: Principles and properties of a plate tectonic Hough transform, Geochem. Geophys. Geosyst. 9(Q08004): doi:10.1029/2008GC002058.